PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G337700.2
Common NameB456_009G337700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 375aa    MW: 42332.4 Da    PI: 9.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G337700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13196238754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +Er+RR++iN+ +++Lr l+Pk +      K++  +iL+ A+eYI +L
  Gorai.009G337700.2 196 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 238
                         69*********************66......***************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-9187243No hitNo description
SuperFamilySSF474591.1E-14188254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.081189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10196238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14196255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSNQPSWVNH GNPSGSQSSN VEMTGTRVLI PVFSGLIELF TSEHMPKDQN LIELVTSQCN  60
AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI PPISDSNSHH SLDGSHSGSS  120
PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV PEQQARFAPD GNKSIKDKTR  180
TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS KMDRTAILTD AIEYIGDLLE  240
EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV KPNQVSSSLA KMAKMEVHVE  300
VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN VTTFNGKVLS MFKVEANRDF  360
QSRKLRDFLT NLTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438254.11e-157PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBLA0A0D2SD140.0A0A0D2SD14_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-30bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]